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In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural or evolutionary relationships between the sequences. Sequence alignment is mainly applied in the identification of homologous genes. There are two different forms of homology. If the origin of two homologous genes is due to a process of gene duplication with the same species, these genes are called paralogs genes whereas when the origin is due to a speciation process resulting in homologous genes in these different species are called orthologous genes.
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